The benchmark cases 1GRN_A:B, 1WQ1_G:R might be considered redundant and the choice is left to the user.

1GRN_A and 1WQ1_R fall into the same SCOP Family. 1GRN_B and 1WQ1_G fall into the same SCOP Superfamily
but different Families. The sequence identities for the corresponding sequences are low. The rasmol files with aligned
complexes are here:

align_1grn_1wq1.ras

NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY.

Alignment: 1GRN_A against 1A4R_A
Query= 
         (191 letters)

>1A4R_A
          Length = 190

 Score =  385 bits (988), Expect = e-112
 Identities = 189/190 (99%), Positives = 189/190 (99%)

Query: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
           MQTIKCVVVGD AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 1   MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60

Query: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120
           QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120

Query: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180
           DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180

Query: 181 EPKKSRRCVL 190
           EPKKSRRCVL
Sbjct: 181 EPKKSRRCVL 190


Alignment: 1GRN_B against 1RGP_
Query= 
         (197 letters)

>1RGP_
          Length = 189

 Score =  364 bits (935), Expect = e-106
 Identities = 185/195 (94%), Positives = 185/195 (94%), Gaps = 10/195 (5%)

Query: 1   LPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQK 60
           LPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQK
Sbjct: 5   LPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQK 64

Query: 61  YNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQV 120
           YNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQV
Sbjct: 65  YNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQV 124

Query: 121 LQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPI 180
           LQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLW          INPI
Sbjct: 125 LQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLW----------INPI 174

Query: 181 NTFTKFLLDHQGELF 195
           NTFTKFLLDHQGELF
Sbjct: 175 NTFTKFLLDHQGELF 189