The antigen is a trimer, and there are 3 "correct answers" to this docking problem. 

NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY. 


Alignment: 1I9R_H against 1I9R_H
Query=
(219 letters)

>1I9R_H
Length = 219

Score = 442 bits (1137), Expect = e-129
Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1 QVQLVQSGAEVVKPGASVKLSCKASGYIFTSYYMYWVKQAPGQGLEWIGEINPSNGDTNF 60
QVQLVQSGAEVVKPGASVKLSCKASGYIFTSYYMYWVKQAPGQGLEWIGEINPSNGDTNF
Sbjct: 1 QVQLVQSGAEVVKPGASVKLSCKASGYIFTSYYMYWVKQAPGQGLEWIGEINPSNGDTNF 60

Query: 61 NEKFKSKATLTVDKSASTAYMELSSLRSEDTAVYYCTRSDGRNDMDSWGQGTLVTVSSAS 120
NEKFKSKATLTVDKSASTAYMELSSLRSEDTAVYYCTRSDGRNDMDSWGQGTLVTVSSAS
Sbjct: 61 NEKFKSKATLTVDKSASTAYMELSSLRSEDTAVYYCTRSDGRNDMDSWGQGTLVTVSSAS 120

Query: 121 TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGL 180
TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGL
Sbjct: 121 TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGL 180

Query: 181 YSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 219
YSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
Sbjct: 181 YSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK 219


Alignment: 1I9R_L against 1I9R_L
Query=
(215 letters)

>1I9R_L
Length = 215

Score = 436 bits (1120), Expect = e-127
Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1 DIVLTQSPATLSVSPGERATISCRASQRVSSSTYSYMHWYQQKPGQPPKLLIKYASNLES 60
DIVLTQSPATLSVSPGERATISCRASQRVSSSTYSYMHWYQQKPGQPPKLLIKYASNLES
Sbjct: 1 DIVLTQSPATLSVSPGERATISCRASQRVSSSTYSYMHWYQQKPGQPPKLLIKYASNLES 60

Query: 61 GVPARFSGSGSGTDFTLTISSVEPEDFATYYCQHSWEIPPTFGGGTKLEIKRTVAAPSVF 120
GVPARFSGSGSGTDFTLTISSVEPEDFATYYCQHSWEIPPTFGGGTKLEIKRTVAAPSVF
Sbjct: 61 GVPARFSGSGSGTDFTLTISSVEPEDFATYYCQHSWEIPPTFGGGTKLEIKRTVAAPSVF 120

Query: 121 IFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 180
IFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS
Sbjct: 121 IFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 180

Query: 181 STLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR 215
STLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
Sbjct: 181 STLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR 215


Alignment: 1I9R_A against 1ALY_A
Alignment: 1I9R_B against 1ALY_B
Alignment: 1I9R_C against 1ALY_C