The benchmark cases 1QFW_IM:AB, and 1QFW_HL:AB come from the same
pdb file but involve two separate antibodies binding at different epitopes of
Gonadotopin.

NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY.

Alignment: 1QFW_I against 1QFW_I
Query= 
         (120 letters)

>1QFW_I
          Length = 120

 Score =  249 bits (636), Expect = 8e-72
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   QVQLQESGGHLVKPGGSLKLSCAASGFAFSSFDMSWIRQTPEKRLEWVASITNVGTYTYY 60
           QVQLQESGGHLVKPGGSLKLSCAASGFAFSSFDMSWIRQTPEKRLEWVASITNVGTYTYY
Sbjct: 1   QVQLQESGGHLVKPGGSLKLSCAASGFAFSSFDMSWIRQTPEKRLEWVASITNVGTYTYY 60

Query: 61  PGSVKGRFSISRDNARNTLNLQMSSLRSEDTALYFCARQGTAAQPYWYFDVWGAGTTVTV 120
           PGSVKGRFSISRDNARNTLNLQMSSLRSEDTALYFCARQGTAAQPYWYFDVWGAGTTVTV
Sbjct: 61  PGSVKGRFSISRDNARNTLNLQMSSLRSEDTALYFCARQGTAAQPYWYFDVWGAGTTVTV 120


Alignment: 1QFW_M against 1QFW_M
Query= 
         (107 letters)

>1QFW_M
          Length = 107

 Score =  220 bits (561), Expect = 3e-63
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   DIELTQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPD 60
           DIELTQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPD
Sbjct: 1   DIELTQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPD 60

Query: 61  RFTGSGSATDFTLTISSVQAEDFADYHCGQTYNHPYTFGGGTKLEIK 107
           RFTGSGSATDFTLTISSVQAEDFADYHCGQTYNHPYTFGGGTKLEIK
Sbjct: 61  RFTGSGSATDFTLTISSVQAEDFADYHCGQTYNHPYTFGGGTKLEIK 107


Alignment: 1QFW_A against 1HRP_A
Query= 
         (87 letters)

>1HRP_A
          Length = 86

 Score =  188 bits (477), Expect = 1e-53
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 1  DCPECTLQENPFFSQPGAPILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSY 60
          DCPECTLQENPFFSQPGAPILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSY
Sbjct: 3  DCPECTLQENPFFSQPGAPILQCMGCCFSRAYPTPLRSKKTMLVQKNVTSESTCCVAKSY 62

Query: 61 NRVTVMGGFKVENHTACHCSTCYY 84
          NRVTVMGGFKVENHTACHCSTCYY
Sbjct: 63 NRVTVMGGFKVENHTACHCSTCYY 86


Alignment: 1QFW_B against 1HRP_B
Query= 
         (110 letters)

>1HRP_B
          Length = 110

 Score =  239 bits (611), Expect = 5e-69
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   KEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVCNYRD 60
           KEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVCNYRD
Sbjct: 1   KEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGVLPALPQVVCNYRD 60

Query: 61  VRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCD 110
           VRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCD
Sbjct: 61  VRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDHPLTCD 110