NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY. 


Alignment: 2ido_A against 1j54_A

Query= 2ido_A mol:protein length:186  DNA polymerase III epsilon subunit

>1j54_A mol:protein length:186  DNA polymerase III, epsilon chain
          Length = 186

 Score =  385 bits (990), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDP 60
           MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDP
Sbjct: 1   MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDP 60

Query: 61  EAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPK 120
           EAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPK
Sbjct: 61  EAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPK 120

Query: 121 TNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTG 180
           TNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTG
Sbjct: 121 TNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTG 180

Query: 181 GQTSMA 186
           GQTSMA
Sbjct: 181 GQTSMA 186

Alignment: 2ido_B against 1se7_A

Query= 2ido_B mol:protein length:83  Hot protein

>1se7_A mol:protein length:83  HOMOLOGUE OF THE THETA SUBUNIT OF DNA
          POLYMER
          Length = 83

 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MYDWNIAAKSQEERDKVNVDLAASGVAYKERLNIPVIAEQVAREQPENLRTYFMERLRHY 60
          MYDWNIAAKSQEERDKVNVDLAASGVAYKERLNIPVIAEQVAREQPENLRTYFMERLRHY
Sbjct: 1  MYDWNIAAKSQEERDKVNVDLAASGVAYKERLNIPVIAEQVAREQPENLRTYFMERLRHY 60

Query: 61 RQLSLQLPKGSDPAYQKDDAVKK 83
          RQLSLQLPKGSDPAYQKDDAVKK
Sbjct: 61 RQLSLQLPKGSDPAYQKDDAVKK 83