Query: 2ot3 chain A

>pdb|1TXU|A Related structures Chain A, Crystal Structure Of The Vps9 Domain Of 
Rabex-5
Length=273

 Score =  502 bits (1293),  Expect = 3e-143, Method: Composition-based stats.
 Identities = 254/263 (96%), Positives = 254/263 (96%), Gaps = 0/263 (0%)

Query  9    SIETDRVSKEFIEFLKTFHKTGQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAE  68
            SIETDRVSKEFIEFLKTFHKTGQEIYKQTKLFLEG HYKRDLSIEEQSECAQDFYHNVAE
Sbjct  11   SIETDRVSKEFIEFLKTFHKTGQEIYKQTKLFLEGXHYKRDLSIEEQSECAQDFYHNVAE  70

Query  69   RMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQ  128
            R QTRGKVPPERVEKI DQIEKYI TRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQ
Sbjct  71   RXQTRGKVPPERVEKIXDQIEKYIXTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQ  130

Query  129  MLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPAS  188
             LCVPVNEDIPEVSD VVKAITDIIE DSKRVPRDKLACITKCSKHIFNAIKITKNEPAS
Sbjct  131  XLCVPVNEDIPEVSDXVVKAITDIIEXDSKRVPRDKLACITKCSKHIFNAIKITKNEPAS  190

Query  189  ADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDA  248
            ADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRL TGEDGYYFTNLCCAVAFIEKLDA
Sbjct  191  ADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLXTGEDGYYFTNLCCAVAFIEKLDA  250

Query  249  QSLNLSQEDFDRYMSGQTSPRKQ  271
            QSLNLSQEDFDRY SGQTSPRKQ
Sbjct  251  QSLNLSQEDFDRYXSGQTSPRKQ  273

Query: 2ot3 chain B

>pdb|1YZU|A Related structures Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A 
Resolution
Length=170

 Score =  342 bits (878),  Expect = 2e-95, Method: Composition-based stats.
 Identities = 170/170 (100%), Positives = 170/170 (100%), Gaps = 0/170 (0%)

Query  1    GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW  60
            GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW
Sbjct  1    GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW  60

Query  61   DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK  120
            DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK
Sbjct  61   DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK  120

Query  121  IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET  170
            IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET
Sbjct  121  IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET  170