NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY.
Alignment: 3d5s_A against 1c3d_A
Query= 3d5s_A mol:protein length:297 Complement C3
>1c3d_A mol:protein length:294 C3D
Length = 294
Score = 605 bits (1560), Expect = e-173, Method: Compositional matrix adjust.
Identities = 292/292 (100%), Positives = 292/292 (100%)
Query: 6 DAERLKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQ 65
DAERLKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQ
Sbjct: 3 DAERLKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQ 62
Query: 66 QLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPD 125
QLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPD
Sbjct: 63 QLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPD 122
Query: 126 GVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDF 185
GVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDF
Sbjct: 123 GVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDF 182
Query: 186 LEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSY 245
LEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSY
Sbjct: 183 LEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSY 242
Query: 246 ALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAP 297
ALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAP
Sbjct: 243 ALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAP 294
Alignment: 3d5s_C against 2gom_A
Query= 3d5s_C mol:protein length:65 Fibrinogen-binding protein
>2gom_A mol:protein length:61 Fibrinogen-binding protein
Length = 61
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/61 (98%), Positives = 60/61 (98%)
Query: 5 IKKEQKLIQAQNLVREFEKTHTVSAHAKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLV 64
IKKEQKLIQAQNLVREFEKTHTVSAH KAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLV
Sbjct: 1 IKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLV 60
Query: 65 R 65
R
Sbjct: 61 R 61