NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY. 


Alignment: 3d5s_A against 1c3d_A

Query= 3d5s_A mol:protein length:297  Complement C3

>1c3d_A mol:protein length:294  C3D
          Length = 294
 
 Score =  605 bits (1560), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 292/292 (100%), Positives = 292/292 (100%)

Query: 6   DAERLKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQ 65 
           DAERLKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQ
Sbjct: 3   DAERLKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQ 62 

Query: 66  QLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPD 125
           QLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPD
Sbjct: 63  QLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPD 122

Query: 126 GVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDF 185
           GVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDF
Sbjct: 123 GVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDF 182

Query: 186 LEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSY 245
           LEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSY
Sbjct: 183 LEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSY 242

Query: 246 ALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAP 297
           ALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAP
Sbjct: 243 ALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAP 294

Alignment: 3d5s_C against 2gom_A

Query= 3d5s_C mol:protein length:65  Fibrinogen-binding protein

>2gom_A mol:protein length:61  Fibrinogen-binding protein
          Length = 61
          
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/61 (98%), Positives = 60/61 (98%)

Query: 5  IKKEQKLIQAQNLVREFEKTHTVSAHAKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLV 64
          IKKEQKLIQAQNLVREFEKTHTVSAH KAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLV
Sbjct: 1  IKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLV 60

Query: 65 R 65
          R
Sbjct: 61 R 61