Query: 1jmo chain A

>pdb|1JMJ|A Related structures Chain A, Crystal Structure Of Native Heparin Cofactor 
Ii
Length=480

 Score =  971 bits (2509),  Expect = 0.0, Method: Composition-based stats.
 Identities = 480/480 (100%), Positives = 480/480 (100%), Gaps = 0/480 (0%)

Query  1    GSKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLLPADFHKENTVTNDWIPEGEEDDDY  60
            GSKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLLPADFHKENTVTNDWIPEGEEDDDY
Sbjct  1    GSKGPLDQLEKGGETAQSADPQWEQLNNKNLSMPLLPADFHKENTVTNDWIPEGEEDDDY  60

Query  61   LDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAGNILQLFHGKSRIQRLNILNAKFAFNLYR  120
            LDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAGNILQLFHGKSRIQRLNILNAKFAFNLYR
Sbjct  61   LDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAGNILQLFHGKSRIQRLNILNAKFAFNLYR  120

Query  121  VLKDQVNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIH  180
            VLKDQVNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIH
Sbjct  121  VLKDQVNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIH  180

Query  181  NLFRKLTHRLFRRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFI  240
            NLFRKLTHRLFRRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFI
Sbjct  181  NLFRKLTHRLFRRNFGYTLRSVNDLYIQKQFPILLDFKTKVREYYFAEAQIADFSDPAFI  240

Query  241  SKTNNHIMKLTKGLIKDALENIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNERE  300
            SKTNNHIMKLTKGLIKDALENIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNERE
Sbjct  241  SKTNNHIMKLTKGLIKDALENIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNERE  300

Query  301  VVKVSMMQTKGNFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRVVE  360
            VVKVSMMQTKGNFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRVVE
Sbjct  301  VVKVSMMQTKGNFLAANDQELDCDILQLEYVGGISMLIVVPHKMSGMKTLEAQLTPRVVE  360

Query  361  RWQKSMTNRTREVLLPKFKLEKNYNLVESLKLMGIRMLFDKNGNMAGISDQRIAIDLFKH  420
            RWQKSMTNRTREVLLPKFKLEKNYNLVESLKLMGIRMLFDKNGNMAGISDQRIAIDLFKH
Sbjct  361  RWQKSMTNRTREVLLPKFKLEKNYNLVESLKLMGIRMLFDKNGNMAGISDQRIAIDLFKH  420

Query  421  QGTITVNEEGTQATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLLFMGRVANPSRS  480
            QGTITVNEEGTQATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLLFMGRVANPSRS
Sbjct  421  QGTITVNEEGTQATTVTTVGFMPLSTQVRFTVDRPFLFLIYEHRTSCLLFMGRVANPSRS  480

Query: 1jmo chain H

>pdb|2CN0|H Related structures Chain H, Complex Of Recombinant Human Thrombin With 
A Designed Inhibitor
Length=257

 Score =  546 bits (1406),  Expect = 3e-156, Method: Composition-based stats.
 Identities = 255/256 (99%), Positives = 256/256 (100%), Gaps = 0/256 (0%)

Query  3    VEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV  62
            VEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV
Sbjct  2    VEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLV  61

Query  63   RIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLP  122
            RIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLP
Sbjct  62   RIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLP  121

Query  123  DRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRI  182
            DRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRI
Sbjct  122  DRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRI  181

Query  183  TDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYT  242
            TDNMFCAGYKPDEGKRGDACEGD+GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYT
Sbjct  182  TDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYT  241

Query  243  HVFRLKKWIQKVIDQF  258
            HVFRLKKWIQKVIDQF
Sbjct  242  HVFRLKKWIQKVIDQF  257

Query: 1jmo chain L

>pdb|2CN0|L Related structures Chain L, Complex Of Recombinant Human Thrombin With 
A Designed Inhibitor
Length=28

 Score = 49.3 bits (116),  Expect = 3e-07, Method: Composition-based stats.
 Identities = 27/27 (100%), Positives = 27/27 (100%), Gaps = 0/27 (0%)

Query  21  DCGLRPLFEKKSLEDKTERELLESYID  47
           DCGLRPLFEKKSLEDKTERELLESYID
Sbjct  2   DCGLRPLFEKKSLEDKTERELLESYID  28