The kinase is a trimer and there are 3 "correct answers" to this docking problem.

This benchmark case is special. Because the alignments below align only the residues visible in the
electron densities, you cannot see that there is a stretch of 9 residues missing in BOTH bound and unbound
structures 1KKL_A and 1JB1_A. We recommend modeling them in for best docking results.

NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY.

Alignment: 1KKL_A against 1JB1_A
Query= 
         (167 letters)

>1JB1_A
          Length = 157

 Score =  286 bits (733), Expect = 9e-83
 Identities = 157/164 (95%), Positives = 157/164 (95%), Gaps = 7/164 (4%)

Query: 1   ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGA 60
           ERRS HGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGA
Sbjct: 1   ERRS-HGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGA 59

Query: 61  APPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDEQTQLIFDVPVPKI 120
           APPILSHLLEIRGLGIIDV NLFGAGAVREDTTISLIVHLENWTPD   QLIFDVPVPKI
Sbjct: 60  APPILSHLLEIRGLGIIDV-NLFGAGAVREDTTISLIVHLENWTPD---QLIFDVPVPKI 115

Query: 121 TVPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEH 164
           TVPVKVGRNLAIIIEVAA NFRAKS GYDATKTFEKNLNHLIEH
Sbjct: 116 TVPVKVGRNLAIIIEVAA-NFRAKS-GYDATKTFEKNLNHLIEH 157


Alignment: 1KKL_H against 2HPR_
Query= 
         (86 letters)

>2HPR_
          Length = 87

 Score =  160 bits (405), Expect = 3e-45
 Identities = 83/86 (96%), Positives = 84/86 (97%)

Query: 1  QKTFKVTADSGIHARPATVLVQTASKYDADVNLEYNGKTVNLKSIMGVMSLGIAKGAEIT 60
          QKTFKVTADSGIHARPATVLVQTASKYDADVNLEYNGKTVNLKSIMGV+SLGIAKGAEIT
Sbjct: 2  QKTFKVTADSGIHARPATVLVQTASKYDADVNLEYNGKTVNLKSIMGVVSLGIAKGAEIT 61

Query: 61 ISASGADENDALNALEETMKSERLGE 86
          ISASGADENDALNALEETMK E LGE
Sbjct: 62 ISASGADENDALNALEETMKCEGLGE 87