NOTE THAT IN THE ALIGNMENTS BELOW, GAPS MOST LIKELY INDICATE
RESIDUES MISSING IN THE ELECTRON DENSITY. 


Alignment: 1zhh_A against 1jx6_A

Query= 1zhh_A mol:protein length:344  Autoinducer 2-binding periplasmic protein lux

>1jx6_A mol:protein length:342  LUXP PROTEIN
          Length = 342

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/342 (100%), Positives = 342/342 (100%)

Query: 3   VLNGYWGYQEFLDEFPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWV 62 
           VLNGYWGYQEFLDEFPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWV
Sbjct: 1   VLNGYWGYQEFLDEFPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWV 60 

Query: 63  RNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKF 122
           RNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKF
Sbjct: 61  RNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKF 120

Query: 123 VEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSV 182
           VEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSV
Sbjct: 121 VEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSV 180
          
Query: 183 LYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYA 242
           LYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYA
Sbjct: 181 LYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYA 240

Query: 243 CSTDVALGAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAI 302
           CSTDVALGAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAI
Sbjct: 241 CSTDVALGAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAI 300

Query: 303 KWDLEDKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN 344
           KWDLEDKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN
Sbjct: 301 KWDLEDKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN 342

Alignment: 1zhh_B against 2hje_A

Query= 1zhh_B mol:protein length:242  Autoinducer 2 sensor kinase/phosphatase luxQ

>2hje_A mol:protein length:221  Autoinducer 2 sensor kinase/phosphatase
           luxQ
          Length = 221

 Score =  446 bits (1147), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/220 (99%), Positives = 220/220 (100%)

Query: 16  TKQQTSALIHNIFDSHFAAIQIHHDSNSKSEVIRDFYTDRDTDVLNFFFLSIDQSDPSHT 75
           +KQQTSALIHNIFDSHFAAIQIHHDSNSKSEVIRDFYTDRDTDVLNFFFLSIDQSDPSHT
Sbjct: 2   SKQQTSALIHNIFDSHFAAIQIHHDSNSKSEVIRDFYTDRDTDVLNFFFLSIDQSDPSHT 61

Query: 76  PEFRFLTDHKGIIWDDGNAHFYGVNDLILDSLANRVSFSNNWYYINVMTSIGSRHMLVRR 135
           PEFRFLTDHKGIIWDDGNAHFYGVNDLILDSLANRVSFSNNWYYINVMTSIGSRHMLVRR
Sbjct: 62  PEFRFLTDHKGIIWDDGNAHFYGVNDLILDSLANRVSFSNNWYYINVMTSIGSRHMLVRR 121

Query: 136 VPILDPSTGEVLGFSFNAVVLDNNFALMEKLKSESNVDNVVLVANSVPLANSLIGDEPYN 195
           VPILDPSTGEVLGFSFNAVVLDNNFALMEKLKSESNVDNVVLVANSVPLANSLIGDEPYN
Sbjct: 122 VPILDPSTGEVLGFSFNAVVLDNNFALMEKLKSESNVDNVVLVANSVPLANSLIGDEPYN 181

Query: 196 VADVLQRKSSDKRLDKLLVIETPIVVNAVTTELCLLTVQD 235
           VADVLQRKSSDKRLDKLLVIETPIVVNAVTTELCLLTVQD
Sbjct: 182 VADVLQRKSSDKRLDKLLVIETPIVVNAVTTELCLLTVQD 221