Decoy Sets

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Below are decoy sets of predictions made by various ZDOCK versions our protein docking Benchmark. Also, the ZRANK predictions are available. You are welcome to use them to test your own energy functions and tools (please reference accordingly; see the included README file). The tar files contain the structure predictions (in ZDOCK output format) and RMSD values of the predictions. The legacy Benchmark1.0 decoy sets are also included below, however we recommend using the Benchmark2.0 and Benchmark3.0 sets if possible, as they represent a larger and more comprehensive set of proteins.

Benchmark3.0 (For The 40 NEW Cases)
  • ZDOCK2.1
  • ZDOCK2.3
  • ZDOCK3.0
  • ZDOCK2.1+ZRANK
  • ZDOCK2.3+ZRANK
  • ZDOCK3.0+ZRANK
    Benchmark2.0
  • ZDOCK2.1
  • ZDOCK2.3
  • ZDOCK3.0
  • ZDOCK2.1+ZRANK
  • ZDOCK2.3+ZRANK
  • ZDOCK3.0+ZRANK
    Benchmark1.0
  • ZDOCK1.3
  • ZDOCK2.1
  • ZDOCK2.3

    Comments and questions to

    Last modified: Wednesday, 27-May-2009 16:47:59 EDT